Protocol for genome-scale in vivo CRISPR screening to study protection of beta cells under autoimmunity in a type 1 diabetes mouse model

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dc.contributor.authorLi, Jian
dc.contributor.authorLee, Yu-Chi
dc.contributor.authorIessi, Isabela L.
dc.contributor.authorWu, Chialing
dc.contributor.authorYi, Peng
dc.contributor.authorCai, Erica P.
dc.contributor.departmentMedicine, School of Medicine
dc.date.accessioned2023-11-02T08:50:57Z
dc.date.available2023-11-02T08:50:57Z
dc.date.issued2023
dc.description.abstractAutoimmunity-induced pancreatic beta cell failure is the main characteristic of type 1 diabetes (T1D). Here, we describe a protocol for genome-scale in vivo CRISPR-Cas9 screening for use in a mouse model of T1D. Using a non-obese-diabetic-derived mouse beta cell line, NIT-1, and a genome-wide CRISPR-Cas9 knockout library (GeCKO-v2), we describe how to identify genes that confer resistance to autoimmune killing. This protocol can be applied in other mouse models of autoimmunity. For complete details on the use and execution of this protocol, please refer to Cai et al. (2020).
dc.eprint.versionFinal published version
dc.identifier.citationLi J, Lee YC, Iessi IL, Wu C, Yi P, Cai EP. Protocol for genome-scale in vivo CRISPR screening to study protection of beta cells under autoimmunity in a type 1 diabetes mouse model [published online ahead of print, 2023 Mar 13]. STAR Protoc. 2023;4(2):102155. doi:10.1016/j.xpro.2023.102155
dc.identifier.urihttps://hdl.handle.net/1805/36868
dc.language.isoen_US
dc.publisherElsevier
dc.relation.isversionof10.1016/j.xpro.2023.102155
dc.relation.journalSTAR Protocols
dc.rightsAttribution-NonCommercial-NoDerivatives 4.0 Internationalen
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/
dc.sourcePMC
dc.subjectCRISPR
dc.subjectImmunology
dc.subjectMetabolism
dc.subjectSequencing
dc.titleProtocol for genome-scale in vivo CRISPR screening to study protection of beta cells under autoimmunity in a type 1 diabetes mouse model
dc.typeArticle
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