Forensic & Investigative Sciences Program Theses and Dissertations

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Evaluation of Odor Compounds Sensed by Explosives-Detecting Canines
(2013-08-14) Kitts, Kelley M.; Goodpaster, John V. (John Vincent); Lee, Lei; Siegel, Jay A.; Picard, Christine
Canines are regularly utilized by law enforcement agencies to detect explosives. However, the mechanism by which canines respond to explosive vapors is not well understood, leading to difficulties in canine training and testing. It is known that the amount of vapor generated from explosive compounds is dependent upon several factors including sample amount, vapor pressure, and the degree of confinement. Underlying these factors is the basic process of evaporation of an unconfined explosive, which is rucial to understanding how explosive vapors behave in other, more confined, systems. In Stage One of this study, evaporation rates were determined for several explosive liquids using an analytical balance. These rates were compared to one another as well as to theoretical models for the evaporation of liquids. In general and as expected, mass decreased linearly with time and evaporation rates decreased logarithmically as boiling point increased. Several examples of solvent “pinning” on a metal surface were also observed. While an empirical model for the evaporation of unconfined explosive liquids was developed, a comprehensive model for the escape of explosive vapors from sealed containers (i.e., a suitcase, knapsack, or IED container itself) is needed. The second part of Stage One of this study was to determine that the flow rate of explosive vapors escaping from relatively large orifices does not conform to Fick’s Law of Diffusion. Fick’s model states that the flow rate is linearly dependent upon the cross sectional area of the orifice and the material’s diffusion coefficient. Instead, the flow rate was found to be linearly dependent upon the diameter of the orifice due to the tendency of the flow to diffuse outwards from its circular edge. A clear relationship between flow rate and diffusion coefficient was seen, however. Additional uncertainty arises concerning the complexity of the odor generated from explosive compounds. Because explosive vapors are often complex (they consist of multiple chemical compounds), confusion exists regarding the cause of canine alert; that is the “odor compound” that allows for canine detection of various explosives. Although 2, 4- dinitrotoluene (DNT) has been explored as a potential odor compound, the possibility of a nitrated explosive inherently producing nitrated gas upon decomposition has not. Stage Two of this study focused on evaluating nitrate as a potential cause of canine alerts. An LC/MS method for the detection of nitrate ions in Composition C-4 and flake trinitrotoluene (TNT) was developed and tested. Instrumental analysis was not successful in detecting nitrate ions in any of the explosives tested. The lack of nitrate was confirmed using a diphenylamine color test for nitrates, thus eliminating nitrate as an odor compound and cause of canine alert to nitroaromatic compounds. 2, 4-DNT has been introduced as a potential odor compound of TNT, however, the mechanisms behind its vapor emission have not been thoroughly explored. More specifically, due to the “sticky” nature of the 2, 4-DNT isomer, the effects of surface adhesion to container walls are of concern. In particular, whether the amount of material lost to surface adhesion is significant enough to effect canine detection of TNT. A second focus of Stage Two explored this concern. A GC/MS method for the detection and separation of TNT and DNT isomers in liquid extracts was developed and the amount of 2, 4-DNT residues adhering to container walls was quantified. These values, compared to the amount 2,4-DNT expected to saturate each container (determined by the Ideal Gas Law), showed a significant preference of 2,4-DNT in the solid phase as opposed to in the gas phase. The amount of residue adhering to the walls of a gallon can differed from expected values by nearly 70%. The amount of material extracted from a quart can exceeded expected values by 137%. The apparent sticky nature of 2, 4-DNT resulted in a significant loss of material needed to fully saturate a container and thus canine detection success may be affected. In the final stage of this study, theories regarding odor compounds and odor availability of nitromethane, TNT, and Composition C-4 were tested using certified explosives-detecting canines. These trials included thirty-three canine-handler teams from eight government agencies. The odor availability of nitromethane was tested by placing varying volumes of nitromethane in containers with differing degrees of confinement and studying the effects on canine detection success. The odor availability trial showed no significant effect of sample amount or degree of confinement on canine detection so long as the sample volume was sufficient to saturate its container. In this study that volume was determined to be < 1 mL. Detection of 2, 4-DNT, TNT-NESST (Non-Hazardous Explosives for Security Training and Testing), and flake TNT were also studied using certified canines. The purpose of this was to identify the odorant responsible for canine alert to the explosive TNT. These trials showed a significant response to 2, 4-DNT compared to TNT and its training aid; this suggests that 2, 4-DNT is the primary cause of canine alerts to TNT. Additionally, Composition C-4 and RDX-NESTT were tested along with potential odor compounds that included the manufacturing solvent, cyclohexanone, the energetic “taggant” 2, 3-dimethyl-2.3-dinitrobutane (DMNB), the plasticizer dioctyladipate (DOA) and its degradation product 2-ethyl-1-hexanol. While some response to DMNB and cyclohexanone was seen, the most significant response was to the actual Composition C-4. This suggests that the cause of canine alert to Composition C-4 is the explosive mixture as a whole and not a single chemical component of the mixture
Multivariate Statistical Methods Applied to the Analysis of Trace Evidence
(2013-08-22) Szkudlarek, Cheryl Ann; Goodpaster, John V. (John Vincent); Picard, Christine; Siegel, Jay A.; Minto, Robert
The aim of this study was to use multivariate statistical techniques to: (1) determine the reproducibility of fiber evidence analyzed by MSP, (2) determine whether XRF is an appropriate technique for forensic tape analysis, and (3) determine if DART/MS is an appropriate technique for forensic tape analysis. This was achieved by employing several multivariate statistical techniques including agglomerative hierarchical clustering, principal component analysis, discriminant analysis, and analysis of variance. First, twelve dyed textile fibers were analyzed by UV-Visible MSP. This analysis included an inter-laboratory study, external validations, differing preprocessing techniques, and color coordinates. The inter-laboratory study showed no statistically significant difference between the different instruments. The external validations had overall acceptable results. Using first derivatives as a preprocessing technique and color coordinates to define color did not result in any additional information. Next, the tape backings of thirty-three brands were analyzed by XRF. After chemometric analysis it was concluded that the 3M tapes with black adhesive can be classified by brand except for Super 33+ (Cold Weather) and Super 88. The colorless adhesive tapes were separated into two large groups which were correlated with the presence of aluminosilicate filler. Overall, no additional discrimination was seen by using XRF compared to the traditional instrumentation for tape analysis previously published. Lastly, the backings of eighty-nine brands of tape were analyzed by DART/MS. The analysis of the black adhesive tapes showed that again discrimination between brands is possible except for Super 33+ and Super 88. However, now Tartan and Temflex have become indistinguishable. The colorless adhesive tapes again were more or less indistinguishable from one another with the exception of Tuff Hand Tool, Qualpack, and a roll of 3M Tartan, which were found to be unique. It cannot be determined if additional discrimination was achieved with DART/MS because the multivariate statistical techniques have not been applied to the other instrumental techniques used during tape analysis.
Evaluation of storage conditions on DNA used for forensic STR analysis
(2014) Beach, Lisa Renae; Picard, Christine; Goodpaster, John V. (John Vincent); Randall, Stephen Karl, 1953-
Short tandem repeat (STR) analysis is currently the most common method for processing biological forensic evidence. STRs are highly polymorphic and allow for a strong statistical power of discrimination when comparing deoxyribonucleic acid (DNA) samples. Since sample testing and court proceedings occur months, if not years apart, samples must be stored appropriately in the event additional testing is needed. There are generally accepted methods to store DNA extracts long-term; however, one universally recognized method does not exist. The goal of this project was to examine various methods of storage and make recommendations for a universal storage method that maintained DNA integrity over time. Four variables were evaluated: storage buffer, storage temperature, initial storage concentration and the effects of repeated freeze-thaw cycles. DNA quantity was assessed using real-time polymerase chain reaction and DNA quality was evaluated using STR genotyping. Overall, the Tris-EDTA (TE) buffer outperformed nuclease free water as a long-term storage buffer for DNA extracts. Stock tubes stabilized concentration better than single use aliquots when eluted with TE while tube type was not significant when water was the buffer. For samples stored in TE, temperature had no effect on DNA integrity over time, but samples stored in water were largely affected at room temperature. Additionally, the greater the initial DNA concentration, the less likely it was to degrade in water. As a result of this research, DNA extracts from forensic samples should be stored long-term in TE buffer with a minimum concentration of 0.1 ng/μL. When water is the buffer, frozen storage is recommended.
The room temperature evaporation behavior of purported azeotropes used as cleaning solutions in art conservation
(2014) Carrison, Megan Sara; Goodpaster, John V. (John Vincent); Jones, Lisa; Sardar, Rajesh; Picard, Christine
Finely-tuned solvent mixtures are used by art conservators for the difficult task of safely and selectively removing yellowed varnish, disfiguring grime, and discolored overpaint from the surface of oil paintings. This process is often referred to as “picture cleaning” and depends on the different solubilities of the obfuscating surface materials and the underlying paint medium. However, differential evaporation rates for the solvents used in these carefully formulated cleaning mixtures can change the potency of the mixture over time, which could potentially lead to solutions having solubility characteristics that are ineffective at cleaning, or worse yet, are deleterious to artists’ oil paints. Azeotropic blends of solvents have been proposed as an alternative for maintaining consistent solvent composition throughout the evaporation process while benefiting from their high vapor pressure relative to the pure solvents. Azeotropes are specific combinations of two or more solvents at a precise concentration that behave as a single solvent, maintaining a constant composition in both the liquid and vapor phases. The use of purportedly azeotropic solvent blends has appeared in the art conservation literature for the cleaning of historic objects and paintings. However, these solvent mixtures are taken from tables of azeotropic compositions given at their boiling point. We have studied one of these solutions, a 19:81 vol% mixture of isopropanol and n-hexane. For the first time, the actual evaporation behavior of this purported azeotropic mixture was followed in detail at room temperature conditions. Through the use of rudimentary vapor pressure measurements, gravimetric analysis, as well as sophisticated compositional determinations of both the liquid phase and headspace of evaporating mixtures by gas chromatography, this particular cleaning solution has been shown to be zeotropic (i.e. NOT an azeotrope) under the conditions typical of conservation studios. The true room temperature azeotropic composition was found instead to contain half as much isopropanol at 9.5 vol%. Art conservators should therefore be dubious of purportedly azeotropic mixtures reported at boiling points well above room temperature. Individual azeotropic cleaning blends are best determined chemically prior to their use in art restoration. Furthermore, the introduction of a model paint film to the evaporating room temperature azeotrope was shown to further confound its behavior, calling into question whether solvent systems can be configured to evaporate with constant composition from the surface of an artwork.
Spectroscopic and chemometric analysis of automotive clear coat paints by micro fourier transform infrared spectroscopy
(2014) Osborne Jr., James D.; Goodpaster, John V. (John Vincent); Manicke, Nicholas; Minto, Robert; Picard, Christine
Clear coats have been part of automotive field paint finishes for several decades. Originally a layer of paint with no pigment, they have evolved into a protective layer important to the appearance and longevity of the vehicle's finish. These clear coats have been studied previously using infrared spectroscopy and other spectroscopic techniques. Previous studies focused on either all the layers of an automobile finish or on chemometric analysis of clear coats using other analytical techniques. For this study, chemometric analysis was performed on preprocessed spectra averaged from five separate samples. Samples were analyzed on a Thermo-Nicolet Nexus 670 connected to a Continuμm™ FT-IR microscope. Two unsupervised chemometric techniques, Agglomerative Hierarchical Clustering (AHC) and Principal Component Analysis (PCA), were used to evaluate the data set. Discriminant analysis, a supervised technique, was evaluated using several known qualifiers; these included cluster group from AHC, make, model, and year. Although discriminant analysis confirmed the AHC and PCA results, no correlation to make, model, or year was indicated.
Design and implementation of gas chromatography-mass spectrometry (GC-MS) methodologies for the analysis of thermally labile drugs and explosives
(2016-11-18) Ash, Jordan R.; Goodpaster, John V.
Gas Chromatography/Mass Spectrometry (GC/MS) is an analytical technique that sees frequent use in labs across the world. It is also one of the most common instruments found in forensic science laboratories. This technique can efficiently and accurately separate and identify a broad range of compounds that may be present in evidence submitted for analysis. In this work, the versatility of this instrument was applied to new methodologies for the detection of explosives and illicit drugs. The analysis of explosives by GC/MS is common but can be problematic. The thermally sensitive nature of some explosives can cause them to degrade when introduced to the high temperatures of a GC/MS inlet. This project looked at the design and implementation of a way to separate and detect a variety of nitrate ester explosives in a short amount of time. In addition to this, a new technique known as Total Vaporization-Solid Phase Microextraction (TV-SPME) was utilized as a pre concentration technique. The parameters for TV-SPME were statistically optimized for a low level of detection. The combination of these areas allowed for the separation of ethylene glycol dinitrate, nitroglycerin, erythritol tetranitrate, and pentaerythritol tetranitrate with a detection limit as low as 50 parts per trillion (ppt). Degradation products such as 1-mononitroglycerin, 1-3-dinitroglycerin, and 2-mononitroglycerin were also successfully identified. The problem of thermally labile compounds extends to the world of illicit drugs. In the second project, several derivatization schemes were developed for common controlled substances. N,O-Bis(trimethylsilyl)trifluoroacetamide (BSTFA) with 1% trimethylchlorosilane (TMCS) was used for silylation, trifluoroacetic anhydride (TFAA) was sued for acylation, and (N,N-Dimethylformamide dimethyl acetal (DMF-DMA) for alkylation. Three different compound classes totaling 15 different drugs were investigated. N,N-Dimethylformamide dimethyl acetal (DMF-DMA) is presented as a novel way of derivatizing several drugs of interest. Primary amines and zwitterions were derivatized with this reagent to much success, specifically: amphetamine, 2-(4-Iodo-2,5-dimethoxyphenyl)ethan-1-amine (2C-I), pregabalin, and gabapentin.
Paper spray mass spectrometry (PS-MS) for toxicological drug screens and biomonitoring of chemical warfare agent exposure
(2017) McKenna, Josiah Michael; Manicke, Nicholas
Paper spray is an ambient ionization technique for mass spectrometry that is well-known for its ability to accomplish rapid and sensitive analyses without any need for sample preparation. This work further develops the technique in two major areas: negative ionization and drug screening. Negative ionization has always been an obstacle to electrospray-based ion sources because of its vulnerability to corona discharge, but methods are presented here to both quantify and suppress this electrical phenomenon, thus preventing it from interfering with qualitative/quantitative analyses. The validity of the discharge-suppressing method is demonstrated for both a simple screen of barbiturates and other acidic drugs (Chapter 2) and the detection and quantitation of chemical warfare agent hydrolysis products (Chapter 3). Additionally, a positive ion drug screen is applied to the analysis of postmortem blood samples (Chapter 4), achieving rapid and effective screening of 137 different drugs ranging from pharmaceuticals to drugs of abuse. The performance of this screen is also evaluated by comparing the results of the postmortem samples to those obtained using a more established series of assays. The research contained herein presents strides toward forensic application of paper spray mass spectrometry, especially in disciplines related to forensic toxicology.
Forensic applications of associating human scalp hair morphology and pigmentation analysis at the microscopic and molecular level
(2017-08) Stubbs, Wesli Kay; Walsh, Susan; Picard, Christine; Berbari, Nicholas
Criminal investigation and the science behind evidence analysis is an ever- growing niche, and forensic DNA phenotyping (FDP) is no exception. For years the only information given to authorities regarding DNA found at a crime scene was STR analysis and matching to a comparative DNA sample from a known source. However, what happens when there is no suspect to compare DNA profiles, or the case involves a missing person where the only available piece of evidence is a biological sample found at the scene? Before FDP, not much could be done with the DNA sample and the investigation would be stalled. Now it is becoming possible to statistically predict an individual’s visual characteristics using FDP. Currently, with the use of Irisplex, HIrisplex, and HIrisplex-S, statistical analyses and predictions can be done for categorical eye, hair, and skin color by looking at specific genes and their associative SNPs, such as HERC2 and OCA2. The more that is understood about trait-determining genes and their functional significance with regards to our physical traits, the more phenotypes can be added to these prediction tools. In an effort to discover additional genes associated with human phenotypes, this study looked at thirty-two pigmentation-associated candidate genes, and eleven hair structure and morphology associated genes in owl monkey pelage samples. Although the samples were not of human origin, it is important to point out the high conservation between humans and their non-human primate relatives. The owl monkeys used in this study were helpful for tracking expression levels of genes controlling differentpigmentation and hair structure types, because each monkey had intra-individual variation in thickness and in coat color which allowed the generation of potential candidate genes for human investigation. Of the 43 total candidate genes analyzed, 36 had successful amplification, and 28 showed a significant difference in expression when comparing the different samples. The second part of this study was to compare quantitative characteristics of human hair in physical samples and two-dimensional (2D) photos. A test set of 45 individuals had 3-5 hairs from the vertex of their head plucked and analyzed, and a 2D photograph was taken of their scalp hair. The idea was to be able to make quantitative phenotypes in hair (such as hair width, amount of curl) from 2D imagery, when physical samples are not available for analysis. This is due to the fact that the majority of genotype-phenotype databases consist solely of photographic imagery, and seldom have hairs that can be microscopically prepared for analysis. Defining measurable phenotypes from 2D photos that strongly correlate with their physical counterparts allow for the generation of a more accurate phenotype for future genome wide association studies (GWAS) within and outside this laboratory that study hair thickness and hair curl. Three different quantitative phenotypes were compared between the microscopic and 2D photo- analysis.
Automated derivatization and identification of controlled substances via total vaporization solid phase microextraction (Tv-Spme) and gas chromatography-mass spectrometry (Gc-Ms)
(2018) Hickey, Logan D.; Goodpaster, John
Gas chromatography-mass spectrometry (GC-MS) is one of the most widely used instrumental techniques for chemical analyses in forensic science laboratories around the world due to its versatility and robustness. The most common type of chemical evidence submitted to forensic science laboratories is seized drug evidence, the analysis of which is largely dominated by GC-MS. Despite this, some drugs are difficult or impossible to analyze by GC-MS under normal circumstances. For these drugs, derivatization can be employed to make them more suitable for GC-MS. In Chapter 1, the derivatization of primary amino and zwitterionic drugs with three different derivatization agents, trifluoroacetic anhydride (TFAA); N,O-bis(trimethylsilyl)trifluoroacetamide + 1% trimethylchlorosilane (BSTFA + 1% TMCS); and dimethylformamide dimethylacetal (DMF-DMA), is discussed. The chromatographic performance was quantified for comparison between the derivatives and their parent drugs. Peak symmetry was compared using the asymmetry factor (As), separation efficiency was measured by the number of theoretical plates (N), and sensitivity was compared by measuring the peak areas. In Chapter 2, derivatization techniques were adapted for an automated on-fiber derivatization procedure using a technique called total vaporization solid phase microextraction (TV-SPME). TV-SPME is a variation of SPME in which a small volume of sample solution is used which can be totally vaporized, removing the need to consider the equilibrium between analytes in the solution and analytes in the headspace. By allowing derivatization agent to adsorb to the SPME fiber prior to introduction to the sample vial, the entire derivatization process can take place on the fiber or in the headspace surrounding it. The use of a robotic sampler made the derivatization procedure completely automated. In Chapter 3, this on-fiber derivatization technique was tested on standards of 14 controlled substances as well as on realistic samples including simulated “street meth”, gamma-hydroxybutyric acid (GHB) in mixed drinks, and hallucinogenic mushrooms, and was also tested on several controlled substances as solid powders. Future work in this area is discussed in Chapter 4, including adapting the method to toxicological analyses both in biological fluids and in hair. Some of the expected difficulties in doing so are discussed, including the endogenous nature of GHB in the human body. The presence of natural GHB in beverages is also discussed, which highlights the need for a quantitative addition to the method. Additional method improvements are also discussed, including proposed solutions for complete derivatization of more of the analytes, and for decreasing analysis time.
Optimization of Marker Sets and Tools for Phenotype, Ancestry, and Identity using Genetics and Proteomics
(2019-08) Wills, Bailey; Walsh, Susan; Picard, Christine; Skalnik, David
In the forensic science community, there is a vast need for tools to help assist investigations when standard DNA profiling methods are uninformative. Methods such as Forensic DNA Phenotyping (FDP) and proteomics aims to help this problem and provide aid in investigations when other methods have been exhausted. FDP is useful by providing physical appearance information, while proteomics allows for the examination of difficult samples, such as hair, to infer human identity and ancestry. To create a “biological eye witness” or develop informative probability of identity match statistics through proteomically inferred genetic profiles, it is necessary to constantly strive to improve these methods. Currently, two developmentally validated FDP prediction assays, ‘HIrisPlex’ and ‘HIrisplex-S’, are used on the capillary electrophoresis to develop a phenotypic prediction for eye, hair, and skin color based on 41 variants. Although highly useful, these assays are limited in their ability when used on the CE due to a 25 variant per assay cap. To overcome these limitations and expand the capacities of FDP, we successfully designed and validated a massive parallel sequencing (MPS) assay for use on both the ThermoFisher Scientific Ion Torrent and Illumina MiSeq systems that incorporates all HIrisPlex-S variants into one sensitive assay. With the migration of this assay to an MPS platform, we were able to create a semi-automated pipeline to extract SNP-specific sequencing data that can then be easily uploaded to the freely accessible online phenotypic prediction tool (found at https://hirisplex.erasmusmc.nl) and a mixture deconvolution tool with built-in read count thresholds. Based on sequencing reads counts, this tool can be used to assist in the separation of difficult two-person mixture samples and outline the confidence in each genotype call. In addition to FDP, proteomic methods, specifically in hair protein analysis, opens doors and possibilities for forensic investigations when standard DNA profiling methods come up short. Here, we analyzed 233 genetically variant peptides (GVPs) within hair-associated proteins and genes for 66 individuals. We assessed the proteomic methods ability to accurately infer and detect genotypes at each of the 233 SNPs and generated statistics for the probability of identity (PID). Of these markers, 32 passed all quality control and population genetics criteria and displayed an average PID of 3.58 x 10-4. A population genetics assessment was also conducted to identify any SNP that could be used to infer ancestry and/or identity. Providing this information is valuable for the future use of this set of markers for human identification in forensic science settings.

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