Browsing by Author "Deiss, Frédérique"
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Item Bottom-Up Fabrication of Plasmonic Nanoantenna-Based High-throughput Multiplexing Biosensors for Ultrasensitive Detection of microRNAs Directly from Cancer Patients’ Plasma(ACS, 2020) Masterson, Adrianna N.; Liyanage, Thakshila; Kaimakliotis, Hristos; Derami, Hamed Gholami; Deiss, Frédérique; Sardar, Rajesh; Chemistry and Chemical Biology, School of ScienceThere is an unmet need in clinical point-of-care (POC) cancer diagnostics for early state disease detection, which would greatly increase patient survival rates. Currently available analytical techniques for early stage cancer diagnosis do not meet the requirements for POC of a clinical setting. They are unable to provide the high demand of multiplexing, high-throughput, and ultrasensitive detection of biomarkers directly from low volume patient samples (“liquid biopsy”). To overcome these current technological bottle-necks, herein we present, for the first time, a bottom-up fabrication strategy to develop plasmonic nanoantenna-based sensors that utilize the unique localized surface plasmon resonance (LSPR) properties of chemically synthesized gold nanostructures, gold triangular nanoprisms (Au TNPs), gold nanorods (Au NRs), and gold spherical nanoparticles (Au SNPs). Our Au TNPs, NRs, and SNPs display refractive index unit (RIU) sensitivities of 318, 225, and 135 nm/RIU respectively. Based on the RIU results, we developed plasmonic nanoantenna-based multiplexing and high-throughput biosensors for the ultrasensitive assay of microRNAs. MicroRNAs are directly linked with cancer development, progression, and metastasis, thus they hold promise as next generation biomarkers for cancer diagnosis and prognosis. The developed biosensors are capable of assaying five different types of microRNAs at an attomolar detection limit. These sets of microRNAs include both oncogenic and tumor suppressor microRNAs. To demonstrate the efficiency as a POC cancer diagnostic tool, we analyzed the plasma of 20-bladder cancer patients without any sample processing steps. Importantly, our liquid biopsy-based biosensing approach is capable of differentiating healthy from early (“non-metastatic”) and late (“metastatic”) stage cancer with a p value <0.0001. Further, receiver operating characteristic analysis shows that our biosensing approach is highly specific, with an area under the curve of 1.0. Additionally, our plasmonic nanoantenna-based biosensors are regenerative, allowing multiple measurements using the same biosensors, which is essential in low- and middle-income countries. Taken together, our multiplexing and high-throughput biosensors have the unmatched potential to advance POC diagnostics and meet global needs for early stage detection of cancer and other diseases (e.g., infectious, autoimmune, and neurogenerative diseases).Item Chemometric Analysis of Volatile Organic Compound Biomarkers of Disease and Development of Solid Phase Microextraction Fibers to Evaluate Gas Sensing Layers(2022-08) Woollam, Mark David; Agarwal, Mangilal; Deiss, Frédérique; Goodpaster, John; Naumann, ChristophCanines can detect different diseases simply by smelling different biological sample types, including urine, breath and sweat. This has led researchers to try and discovery unique volatile organic compound (VOC) biomarkers. The power of VOC biomarkers lies in the fact that one day they may be able to be utilized for noninvasive, rapid and accurate diagnostics at a point of care using miniaturized biosensors. However, the identity of the specific VOC biomarkers must be demonstrated before designing and fabricating sensing systems. Through an extensive series of experiments, VOCs in urine are profiled by solid phase microextraction (SPME) coupled to gas chromatography-mass spectrometry (GC-MS) to identify biomarkers for breast cancer using murine models. The results from these experiments indicated that unique classes of urinary VOCs, primarily terpene/terpenoids and carbonyls, are potential biomarkers of breast cancer. Through implementing chemometric approaches, unique panels of VOCs were identified for breast cancer detection, identifying tumor location, determining the efficacy of dopaminergic antitumor treatments, and tracking cancer progression. Other diseases, including COVID-19 and hypoglycemia (low blood sugar) were also probed to identify volatile biomarkers present in breath samples. VOC biomarker identification is an important step toward developing portable gas sensors, but another hurdle that exists is that current sensors lack selectivity toward specific VOCs of interest. Furthermore, testing sensors for sensitivity and selectivity is an extensive process as VOCs must be tested individually because the sensors do not have modes of chromatographic separation or compound identification. Another set of experiments is presented to demonstrate that SPME fibers can be coated with materials, used to extract standard solutions of VOCs, and analyzed by GC-MS to determine the performance of various gas sensing layers. In the first of these experiments, polyetherimide (PEI) was coated onto a SPME fiber and compared to commercial polyacrylate (PAA) fibers. The second experiment tuned the extraction efficiency of polyvinylidene fluoride (PVDF) - carbon black (CB) composites and showed that they had higher sensitivity for urinary VOC extraction relative to a polydimethylsiloxane (PDMS) SPME fiber. These results demonstrate SPME GC-MS can rapidly characterize and tune the VOC adsorption capabilities of gas sensing layers.Item Detection of Illicit Drugs in Various Matrices Via Total Vaporization Solid-Phase Microextraction(2019-08) Davis, Kymeri Elizabeth; Goodpaster, John; Manicke, Nicholas; Deiss, FrédériqueIn Headspace Solid-Phase Microextraction (Headspace SPME), a sample is heated to encourage a portion of the analyte into the headspace of a vial. A coated fiber is introduced into the sample headspace and the analyte is adsorbed onto the fiber coating. Total Vaporization Solid-Phase Microextraction (TV-SPME) is a technique that is derived from this technique. In TV-SPME, liquid samples are completely vaporized allowing for better adsorption and fewer matrix effects. This method does not require any sample preparation, utilizes minimal supplies and can be automated, making it both an efficient and cost-effective method. Chapter 1 will discuss the theory of SPME and TV-SPME. In Chapter 2, the detection of ɣ-hydroxybutyric acid (GHB) and ɣ-butyrolactone (GBL) in beverages is discussed. The detection of these compounds in beverages is of importance because these drugs may be used to facilitate sexual assault. This crime utilizes substances that cause sedation and memory loss. The derivatization of GHB as well as the properties that make GHB difficult to detect will be discussed. Chapter 3 will discuss the detection of methamphetamine and amphetamine (as their trifluoroacetyl derivatives), GBL, and the trimethylsilyl derivative of GHB in human urine. Amphetamine is a metabolite of methamphetamine, therefore, both drugs should be identified within biological samples. GHB and GBL are metabolites of one another and interconvert when in aqueous solution. This interconversion will be discussed. Chapter 4 will cover method optimization of the Total Vaporization Solid-Phase Microextraction method. Analytes of interest for these analyses were methamphetamine, amphetamine, GHB, and GBL. The optimal extraction temperature ranging from 60-160°C of each drug will be discussed as well as why higher temperatures may not be suitable for this method. A limit of detection study for methamphetamine and amphetamine will also be covered. Chapter 5, the future work chapter, will discuss future analyses using the Total Vaporization Solid-Phase Microextraction method including the analysis of powder materials, plant material, and toxicological samples. Powder material will include the analysis of individual powdered drugs as well as realistic drug mixtures. Some analyses on individual powder samples has already been completed and will be shown. Plant material will include the analysis of naturally occurring compounds found in marijuana plants as well as synthetic cannabinoids. Toxicological samples will expand on previously mentioned urine samples to include drugs such as benzoylecgonine and THC-COOH.Item Determination of Potassium Ion Concentration using Paper-Based Devices and Electrochemical Methods(Office of the Vice Chancellor for Research, 2016-04-08) Taylor, Isaac A.; Deiss, FrédériqueRapid quantification of ions in bodily fluids can be important for guiding an individual’s nutrition to prevent illness. The level of micronutrients (magnesium, calcium, potassium) is also relevant for diagnostics, such as identifying a health condition. For example, potassium levels in blood below 3 mM can be indicative of abnormal heart rhythms. We are currently working on the detection of potassium on a paper-based device as a proof-of-concept of a novel electrochemical micronutrient sensing platform. Paper-based platforms are useful in bioanalysis for point-of-care measurements because of their simplicity, low cost, portability and disposability. These advantages make them a valid alternative to conventional ionselective electrodes, which are fragile, subject to interference from biological samples, often expensive and require careful calibration and maintenance. Our platform is based on an unusual electrochemical method employing the measurement of the shift in potential of a redox reaction. For potassium quantification, we measured the redox reaction of an electrodeposited Prussian blue layer. The shift in potential is proportional to the concentration of the targeted ion (potassium). We explored the best conditions for electrodepositing Prussian blue using commercial screen-printed electrodes and successfully tested aqueous solutions containing potassium ions in the range of 0 to 1 M. The results in this range show a reliable and reproducible trend correlating the shift in potential and the concentration of potassium. We also verified that sodium ions at high concentration in blood have a negligible interference. The next steps of the project include the validation of the assay on paper-based electrodes, tests of human serum samples throughout the relevant health range (3.5-5 mM) and assessment of the reproducibility and specificity of the platform by considering other potentially interfering ions.Item Development Of Paper Spray Mass Spectrometry Cartridges With Solid Phase Extraction For Drug Screening Applications(2024-12) Jakstonyte Ren, Greta ; Manicke, Nicholas; Goodpaster, John; Naumann, Christoph; Deiss, FrédériqueThe rise in overdoses, especially due to synthetic drugs like fentanyl has demonstrated a need for a rapid and simple drug detection method. This work describes the development and optimization of a paper spray mass spectrometry (PS-MS) with integrated solid-phase extraction (SPE) cartridges that can detect a wide range of drugs in plasma and whole blood The results can be obtained providing results in under five minutes with minimal sample preparation. The method is highly adaptable, allowing for rapid response to new emerging drugs. The initial focus on synthetic cannabinoids demonstrated sub-0.1 ng/mL detection limits for eight compounds in 100 µL of plasma. This work was expanded to screen thirty-five analytes from drug classes including fentanyl analogs, cathinones, benzodiazepines, and traditional illicit drugs. Validated according to SWGTOX guidelines, all drugs were detected in low ng/mL ranges. A streamlined data analysis method was also developed using a decision tree algorithm and an in-house library of nearly 200 compounds. This enabled retrospective analysis and detection of emerging drugs, such as 4F-MDMB-BINACA and brorphine, from previous samples. In a study of 400 authentic overdose plasma samples, 102 unique drugs were identified, mostly fentanyl-related. To further simplify the process, an "all-in-one" SPE cartridge was developed for whole blood, effectively pre-concentrating over 20 drugs of abuse. This device showed single and sub-ng/mL detection limits in 70 µL of blood. Samples were stable for 14 days, demonstrating the system’s potential for rapid, practical applications in forensic and clinical settings.Item Electroanalytical Paper-Based Sensors for In-Field Detection of Chlorate-Based Explosives and Quantification of Oxyanions(2023-05) Guimarães Vega, Carolina; Deiss, Frédérique; Manicke, Nicholas; Goodpaster, John; Long, EricImprovised explosive devices (IEDs) are a global threat due to their destructive potential, the easy access to raw materials, and online instructions to manufacture them. These circumstances have led to an increase in the number of IEDs using potassium chlorate as an oxidizer. The standard methods to detect chlorate are mainly designed for laboratory-only testing. Thus, field instrumentation capable of detecting oxidizers from explosives fuel-oxidizers is critical for crime scene investigation and counterterrorism efforts (described in Chapter 1). We developed a paper-based sensor for the in-field detection of chlorate (described in Chapter 2). The sensor is low-cost, disposable, portable, and inexpensive to fabricate, and its flexibility features allow for surface sampling without sample destruction. The sensor has an electrodeposited molybdate sensing layer, as chlorate was reported to have a catalytic effect on the molybdate reduction. The chlorate detection relies on monitoring the change in redox activity of the molybdate sensing layer using different electroanalytical techniques. We effectively demonstrated the analytical performance of the sensor (Chapter 3), obtaining a limit of detection of 1.2 mM and a limit of quantification of 4.10 mM. We evaluated the selectivity of the sensor by testing other oxidizers, such as perchlorate and nitrate, which did not present any electrochemical activity with the molybdate sensing layer. Additionally, we performed an interferent study with sugar, commonly used as fuel in IEDs, and other common white household powders such as baking soda, flour, and corn starch and neither a false positive nor a false negative result was observed (Chapter 3). As bromate has been reported to have a stronger catalytic effect than chlorate on the redox activity of molybdate, the quantification of bromate was also explored, and a bromate sensor was developed using the findings of the chlorate sensor (Chapter 4). The reaction mechanism involved in the molybdate reduction was explored and discussed in Chapter 5. The capability of the sensor in detecting chlorate from combusted samples and post-blast samples was successfully demonstrated in Chapter 6, as well as the design of encased prototypes to allow for an in-field presumptive test, storage, and transport for in-laboratory confirmatory tests and compared the performance of the sensor to the available commercial tests.Item Electrochemical Determination of PH using Paper-Based Devices(2019-08) Metangmo, Armelle; Deiss, Frédérique; Goodpaster, John; Long, EricFor the past decade, many microfluidic paper-based analytical devices have been developed and used in different research fields. These devices are low-cost, portable, flexible, sterilizable, disposable, and easy to manufacture. The microfluidic paper-based analytical devices offer good alternatives to measurements and assays commonly performed in laboratories for analytical and clinical purposes, especially in diagnostics. In this work, we developed an electrochemical paper-based pH sensor. The determination of pH is essential in applications in areas as diverse as in the food industry, agriculture, health care or water treatment. The method presented in this work is an electroanalytical method that involves quantification of pH using stencil-painted graphite electrodes. Preliminary tests showed that pH can be determined on paper-based devices, thus indicating the presence of electroactive elements sensitive to pH on the surface of our electrodes (Chapter 4). Chemical modification of the electrode by adsorption with sodium carbonate and modification of the surface of the electrode was accomplished via: oxygen (ambient air) plasma treatment and pure oxygen plasma treatment. These treatments were to attempt to improve the definition of redox peaks on the CVs (Chapter 5). The changes made to the design of the paper-based device and the addition of a conditioning step improved the definition of the redox peaks on the CVs and increased the pH-sensing ability of our method (Chapter 6). The pH-sensing ability of our method was evaluated by testing solutions over a wide pH range. Adding sodium chloride to samples adjust the solution for accurate pH determination. The pH was successfully measured for solutions with values ranging from 1 to 13 and for artificial saliva samples prepared with pH values in the cavity-prone range (Chapter 7). This work offers a method that uses electroactive elements sensitive to pH on the surface of the PBD electrodes for pH-sensing.Item Electrochemical Tape-and-Paper-Based Sensor for the Quantification of Potassium(2023-08) Zhang, Tommy; Deiss, Frédérique; Webb, IanPotassium levels in serum are used in the diagnosis of diseases involving cardiac arrhythmias, neuromuscular weakness, and chronic kidney diseases. These illnesses are becoming more prevalent, therefore, developing new potassium quantification methods would aid in advancing preventative care. Current methods of quantifying potassium mainly rely on the use of glass ion-selective electrodes which are costly, fragile, and requires frequent maintenance and recalibration. For faster and more accessible quantification of potassium, we are developing low cost, portable, and easy to fabricate electrochemical tape-and-paper-based devices. Our sensor bypasses the inconveniences of ion-selective electrodes and could ultimately serve as a point-of-care device to allow for regular monitoring or even home-use. Our sensing method relies on Prussian blue immobilized on the surface of electrodes as a potassium recognition element. Potassium ions intercalate into the Prussian blue lattice and subsequently changes the electrochemical characteristics of Prussian blue such as the redox peak potentials. These devices are highly robust, feature a limit of detection of 1.3 mM potassium and the response is linear to at least 100 mM, which contains the clinically relevant ranges required for diagnostics. Quantification was developed using cyclic voltammetry, demonstrated in Chapter 3. We observed changes in Prussian blue redox peak potentials at different concentrations of potassium and followed the expected Nernstian response. We investigated multiple methods of immobilizing Prussian blue onto the electrode surfaces to investigate stability and reproducibility in Chapter 4. Adsorption, in-situ synthesis, and carbon paste incorporation of Prussian blue was tested. Prussian blue-carbon paste devices had reproducibility issues and featured broad reduction peaks. In-situ synthesis of Prussian blue directly onto the surface of the electrodes also featured broad reduction peaks but the Prussian blue response was reproducible. The issue with in-situ synthesis was the stability of the Prussian blue layer, which was susceptible to degradation after repeated use of the device, which is required for evaluating the performance of the device. Although adsorption using Prussian blue in water had some reproducibility issues as well, this method led to the most stable Prussian blue layer, had distinct reduction peaks, and was simple to perform. Various solvents were used to dissolve Prussian blue in Chapter 5 to investigate methods of increasing device reproducibility when using adsorption. A few organic solvents were able to dissolve Prussian blue to form a stable solution with the goal of forming a more uniform Prussian blue layer and potentially improving consistency of the layer immobilization. While these alternative solvents were able to dissolve Prussian blue, they also damaged the graphite electrodes on the devices, which altered the electrochemical responses of the devices to the point where potassium quantification was no longer possible. Due to incompatibility between these alternative solvents and the devices, adsorption of Prussian blue in water continued to be used. Different modes of adsorption were explored and was optimized in Chapter 6. By altering the adsorption setup and allowing the Prussian blue particles to settle evenly onto a level electrode surface, device reproductivity increased substantially. To understand the applicability of the devices in real samples, interferent studies were performed in Chapter 7. Other cations such as Na+, Li+, Ca2+, Mg2+, and Ba2+ were not observed to enter the Prussian blue lattice in the cyclic voltammograms. Monovalent cations that share the same charge as K+ but have smaller ionic radius, Na+ and Li+, were able to decrease K+ sensitivity. Divalent cations that had a smaller ionic radius than K+ did not alter sensitivity. The exception was Ba2+, which also decreased K+ sensitivity. These results suggested that both ionic radius and charge of a species were important factors in impacting K+ intercalation into the Prussian blue lattice. Other interferents such as sulfates, phosphates, carbonates, urea, and lactic found in serum and sweat samples were tested. The presence of these interferents decreased the current intensity of the reduction peak of Prussian blue, which resulted in less definition in the peaks. For the future of this project, the effects of interferents found in serum and sweat must be investigated further. Additionally, reproducibility of the devices could be improved further if less harsh organic solvents are tested for adsorption, square wave voltammetry could be used for quantification to evaluate the viability of alternative voltametric techniques, and Prussian blue analogues could be implemented into the devices for quantification of other cations.Item Electrochemical tape-and-paper-based sensors suitable for oral pH measurements(2021-08) Cherebin, Oreoluwa; Deiss, Frédérique; Webb, Ian; Laulhé, SébastienLow oral pH (<5.5) has been shown to play an important role in dental erosion. The measurement of oral pH can be useful in preventative care, in aiding the dental caregiver in determining the likeliness of future dental cavities. The measurement of oral pH has become a popular area of research in an effort to develop a more quantitative method for the diagnosis of dental caries. We are developing an electrochemical tape-and-paper-based pH sensor for future applications in oral pH measurements. These tape-and-paper-based devices are low-cost, easy to fabricate, sterilizable, disposable and portable. The presence of intrinsic material defects of the painted graphite electrode generates oxo-groups which are electroactive. Some of these electroactive species, such as quinone, are pH-dependent and allow for the measurement of pH using cyclic voltammetry. There is shift in the potential of the redox peaks corresponding to the sensing species that can be correlated with the pH of a sample. We optimized the assay with a conditioning oxidative potential pre-treatment step and an ionic adjuster to carry out the pH measurements. We characterized the devices in different buffer solutions, as well as commercial pH standards and establish calibration curves. The reproducibility of the electrochemical response of the devices was also successfully across multiple devices and users. Their shelf-life was demonstrated to be at least three months. The devices successfully measured the pH of beverage and mouthwash, and different formulations of artificial saliva. Their performance in the presence bacteria and in growth media was assessed. Some complex matrices such as growth media required some additional optimization. Towards this objective we fabricated and tested devices with various formulations of carbon paste for the painted working electrode. These flexible tape-and-paper-based devices are promising sensors for pH measurements in oral samples and potentially even for in vivo and in situ pH measurements.Item Enumeration of Rare Cells in Whole Blood by Signal Ion Emission Reactive Release Amplification with Same-Sample RNA Analysis(ACS, 2019) Baird, Zane; Cao, Zehui; Barron, M. Regina; Vorsilak, Anna; Deiss, Frédérique; Pugia, Michael; Chemistry and Chemical Biology, School of ScienceHerein is presented a platform capable of detecting less than 30 cells from a whole blood sample by size-exclusion filtration, microfluidic sample handling, and mass spectrometric detection through signal ion emission reactive release amplification (SIERRA). This represents an approximate 10-fold improvement in detection limits from previous work. Detection by SIERRA is accomplished through the use of novel nanoparticle reagents coupled with custom fluidic fixtures for precise sample transfer. Sample processing is performed in standardized 96-well microtiter plates with commonly available laboratory instrumentation to facilitate assay automation. The detection system is easily amenable to multiplex detection, and compatibility with PCR-based gene assays is demonstrated.