Effects of carbon nanotubes on airway epithelial cells and model lipid bilayers : proteomic and biophysical studies

dc.contributor.advisorBlazer-Yost, Bonnie
dc.contributor.authorLi, Pin
dc.contributor.otherWitzmann, F. A. (Frank A.)
dc.contributor.otherRandall, Stephen Karl, 1953-
dc.contributor.otherPetrache, Horia
dc.contributor.otherWang, Xianzhong
dc.date.accessioned2015-03-02T14:32:17Z
dc.date.available2015-03-02T14:32:17Z
dc.date.issued2014
dc.degree.date2014en_US
dc.degree.disciplineDepartment of Biologyen
dc.degree.grantorPurdue Universityen_US
dc.degree.levelM.S.en_US
dc.descriptionIndiana University-Purdue University Indianapolis (IUPUI)en_US
dc.description.abstractCarbon nanomaterials are widely produced and used in industry, medicine and scientific research. To examine the impact of exposure to nanoparticles on human health, the human airway epithelial cell line, Calu-3, was used to evaluate changes in the cellular proteome that could account for alterations in cellular function of airway epithelia after 24 h exposure to 10 μg/mL and 100 ng/mL of two common carbon nanoparticles, singleand multi-wall carbon nanotubes (SWCNT, MWCNT). After exposure to the nanoparticles, label-free quantitative mass spectrometry (LFQMS) was used to study differential protein expression. Ingenuity Pathway Analysis (IPA) was used to conduct a bioinformatics analysis of proteins identified by LFQMS. Interestingly, after exposure to a high concentration (10 μg/mL; 0.4 μg/cm2) of MWCNT or SWCNT, only 8 and 13 proteins, respectively, exhibited changes in abundance. In contrast, the abundance of hundreds of proteins was altered in response to a low concentration (100 ng/mL; 4 ng/cm2) of either CNT. Of the 281 and 282 proteins that were significantly altered in response to MWCNT or SWCNT, respectively, 231 proteins were the same. Bioinformatic analyses found that the proteins common to both kinds of nanotubes are associated with the cellular functions of cell death and survival, cell-to-cell signaling and interaction, cellular assembly and organization, cellular growth and proliferation, infectious disease, molecular transport and protein synthesis. The decrease in expression of the majority proteins suggests a general stress response to protect cells. The STRING database was used to analyze the various functional protein networks. Interestingly, some proteins like cadherin 1 (CDH1), signal transducer and activator of transcription 1 (STAT1), junction plakoglobin (JUP), and apoptosis-associated speck-like protein containing a CARD (PYCARD), appear in several functional categories and tend to be in the center of the networks. This central positioning suggests they may play important roles in multiple cellular functions and activities that are altered in response to carbon nanotube exposure. To examine the effect of nanotubes on the plasma membrane, we investigated the interaction of short purified MWCNT with model lipid membranes using a planar bilayer workstation. Bilayer lipid membranes were synthesized using neutral 1, 2-diphytanoylsn-glycero-3-phosphocholine (DPhPC) in 1 M KCl. The ion channel model protein, Gramicidin A (gA), was incorporated into the bilayers and used to measure the effect of MWCNT on ion transport. The opening and closing of ion channels, amplitude of current, and open probability and lifetime of ion channels were measured and analyzed by Clampfit. The presence of an intermediate concentration of MWCNT (2 μg/ml) could be related to a statistically significant decrease of the open probability and lifetime of gA channels. The proteomic studies revealed changes in response to CNT exposure. An analysis of the changes using multiple databases revealed alterations in pathways, which were consistent with the physiological changes that were observed in cultured cells exposed to very low concentrations of CNT. The physiological changes included the break down of the barrier function and the inhibition of the mucocillary clearance, both of which could increase the risk of CNT’s toxicity to human health. The biophysical studies indicate MWCNTs have an effect on single channel kinetics of Gramicidin A model cation channel. These changes are consistent with the inhibitory effect of nanoparticles on hormone stimulated transepithelial ion flux, but additional experiments will be necessary to substantiate this correlation.en_US
dc.identifier.urihttps://hdl.handle.net/1805/5968
dc.identifier.urihttp://dx.doi.org/10.7912/C2/2180
dc.language.isoen_USen_US
dc.subjectCarbon Nanotube, Calu-3 cells, DPhPC lipid bilayeren_US
dc.subject.lcshNanotubes -- Research -- Evaluation -- Analysisen_US
dc.subject.lcshNanostructured materials -- Research -- Evaluation -- Analysis -- Methodologyen_US
dc.subject.lcshEpithelial cells -- Effect of chemicals onen_US
dc.subject.lcshBilayer lipid membranes -- Biotechnologyen_US
dc.subject.lcshNanostructured materials industryen_US
dc.subject.lcshOrganic compounds -- Synthesisen_US
dc.subject.lcshCarbon -- Research -- Toxicologyen_US
dc.subject.lcshAirway (Medicine) -- Toxicologyen_US
dc.subject.lcshFullerenesen_US
dc.subject.lcshProtein-protein interactions -- Databasesen_US
dc.subject.lcshProteins -- Analysis -- Data processingen_US
dc.subject.lcshBioinformaticsen_US
dc.subject.lcshMass spectrometry -- Research -- Methodologyen_US
dc.subject.lcshRespiratory mucosa -- Pathophysiologyen_US
dc.subject.lcshProteomicsen_US
dc.subject.lcshBiological transport -- Regulationen_US
dc.subject.lcshOxidative stress -- Physiological effecten_US
dc.subject.lcshCellular signal transductionen_US
dc.subject.lcshCell interactionen_US
dc.subject.lcshBiology -- Research -- Data processingen_US
dc.subject.lcshCells -- Permeabilityen_US
dc.subject.lcshIon channels -- Researchen_US
dc.subject.lcshPulmonary toxicologyen_US
dc.titleEffects of carbon nanotubes on airway epithelial cells and model lipid bilayers : proteomic and biophysical studiesen_US
dc.typeThesisen
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