Browsing by Subject "Elastic net regularization"

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    Comprehensive and Computable Molecular Diagnostic Panel (C2Dx) From Small Volume Specimens for Precision Oncology: Molecular Subtyping of Non-Small Cell Lung Cancer From Fine Needle Aspirates
    (Frontiers Media, 2021-04-16) Su, Jing; Huang, Lynn S.; Barnard, Ryan; Parks, Graham; Cappellari, James; Bellinger, Christina; Dotson, Travis; Craddock, Lou; Prakash, Bharat; Hovda, Jonathan; Clark, Hollins; Petty, William Jeffrey; Pasche, Boris; Chan, Michael D.; Miller, Lance D.; Ruiz, Jimmy; Biostatistics, School of Public Health
    The Comprehensive, Computable NanoString Diagnostic gene panel (C2Dx) is a promising solution to address the need for a molecular pathological research and diagnostic tool for precision oncology utilizing small volume tumor specimens. We translate subtyping-related gene expression patterns of Non-Small Cell Lung Cancer (NSCLC) derived from public transcriptomic data which establish a highly robust and accurate subtyping system. The C2Dx demonstrates supreme performance on the NanoString platform using microgram-level FNA samples and has excellent portability to frozen tissues and RNA-Seq transcriptomic data. This workflow shows great potential for research and the clinical practice of cancer molecular diagnosis.