Browsing by Author "Sarmah, S."

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    Cell adhesion molecule cadherin-6 function in zebrafish cranial and lateral line ganglia development
    (Wiley, 2011-07) Liu, Q.; Dalman, M.R.; Sarmah, S.; Chen, S.; Chen, Y.; Hurlbut, A. K.; Spencer, M.A.; Pancoe, L.; Marrs, J. A.; Biology, School of Science
    Cadherins regulate the vertebrate nervous system development. We previously showed that cadherin-6 message (cdh6) was strongly expressed in the majority of the embryonic zebrafish cranial and lateral line ganglia during their development. Here, we present evidence that cdh6 has specific functions during cranial and lateral line ganglia and nerve development. We analyzed the consequences of cdh6 loss-of-function on cranial ganglion and nerve differentiation in zebrafish embryos. Embryos injected with zebrafish cdh6 specific antisense morpholino oligonucleotides (MOs, which suppress gene expression during development; cdh6 morphant embryos) displayed a specific phenotype, including (i) altered shape and reduced development of a subset of the cranial and lateral line ganglia (e.g., the statoacoustic ganglion and vagal ganglion) and (ii) cranial nerves were abnormally formed. These data illustrate an important role for cdh6 in the formation of cranial ganglia and their nerves.
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    Ethanol-Induced Defects on Zebrafish Retinal Development: Rescue by Nutritional Supplements
    (Office of the Vice Chancellor for Research, 2015-04-17) Muralidharan, P.; Sarmah, S.; Marrs, J. A.
    Fetal Alcohol Spectrum Disorder (FASD), a result of prenatal alcohol exposure, produces a wide range of developmental defects including severe ocular defects that include microphthalmia, optic nerve hypoplasia, scotopic vision loss and coloboma. The zebrafish FASD model recapitulates many defects seen in human patients. Ethanol exposure (100 and 150 mM) during early development (midblatula transition through somitogenesis, 2-24 hours post fertilization, hpf) produced severe ocular defects including microphthalmia, optic nerve hypoplasia and photoreceptor differentiation defect. Examining specific terminal differentiation markers showed ethanol-induced defects in differentiation of most retinal cell types. Ethanol exposure altered gene expression of critical transcription factors. Increased cell death accounted for the small eye phenotype, and the retina responds with increased proliferation in the outer nuclear layer, inner nuclear layer, and ciliary marginal zone (CMZ). Ethanol treated retinas showed an expanded CMZ and cell cycle exit defects of the photoreceptor cells. In order to examine progenitor cell populations and differentiation defects in the ethanol treated retinal cells, specific markers for retinal stem, precursor and progenitor cell populations were examined. While control retinas showed terminally differentiated photoreceptors at 72 hpf, ethanol treated retinas expressed immature and nascent photoreceptor markers in cell populations undergoing proliferation. Nutrient co-supplement with retinoic acid (RA) or folic acid (FA) with ethanol during 2-24 hpf rescued photoreceptor differentiation and optic nerve defects. Competitive inhibition of RA synthesis by ethanol was hypothesized by Duester (1991), and rescue of ethanol-induced retinal defects suggest an effect on RA levels in the developing retina. Treatment with RA inhibitors produced retinal defects similar to ethanol-treated embryos. Interestingly, RA supplementation (24-48 hpf and 48-72 hpf) following ethanol treatment (2-24 hpf) restored photoreceptor differentiation suggesting RA provides a critical signal for precursor cell differentiation. In contrast, post-treatment with FA, did not restore retinal cell differentiation. FA functions as a critical component of one-carbon metabolism and can influence histone- and DNA-methyl transferase activities. Molecular mechanisms underlying disruption of cell cycle exit and FA rescue of ethanol-induced defects are being actively studied.
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    Using Zebrafish to implement a Course-Based Undergraduate Research Experience (CURE) to study Teratogenesis in Two Biology Laboratory Courses
    (Office of the Vice Chancellor for Research, 2015-04-17) Sarmah, S.; Chism, G.W.; Vaughan, M. A.; Muralidharan, P.; Marrs, J.A.; Marrs, Kathleen A.
    Abstract: Two related course-based undergraduate research experiences (CUREs) were introduced into a freshman introductory biology and a sophomore level cell biology class. In fall 2013, first semester freshman students were introduced to scientific research in an introductory biology laboratory course. Students were mentored to develop and execute original research projects investigating embryonic nicotine and caffeine exposure effects on development, particularly on heart development and function, using zebrafish embryos. In spring 2014, sophomore level cell biology students extended these studies and analyzed the effects of nicotine and caffeine at precise times in gastrulation. The freshman research experience was repeated in fall 2014 where a new group of students expanded the earlier research to investigate effects of additional toxicants on development. Students designed new protocols, made measurements, documented data, presented results and generated novel, high quality preliminary data that will be further studied in successive semesters. Student researchers identified novel effects of nicotine exposure on gastrulation and heart morphogenesis. Student surveys showed the greatest gains in ability to (1) design experiments, (2) analyze data, and (3) make scientific presentations. This CURE approach generated excitement and engagement that translated into high student satisfaction and enhanced learning.