IU Indianapolis ScholarWorks :: Browsing by Author "Gilhooly, William P., III"

Browsing by Author "Gilhooly, William P., III"

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A Combined Molecular and Isotopic Study of Sulfur Bacteria in Meromictic Lakes of the Pacific Northwest
(2023-12) Harris, James H., IV; Gilhooly, William P., III; Druschel, Gregory K.; Bird, Broxton W.
The isotope effects that result from the activity of modern sulfur metabolizing bacteria serve as analogs to interpreting the sulfur isotope values preserved in the geologic record. This biogenic signal is vital to reconstructing the history of Earth’s ancient oceans and atmosphere. However, the isotope compositions imprinted by these bacteria were influenced by multiple factors that must be considered when using these values to make interpretations about environmental change. These factors include: (1) sulfate availability, (2) the rapid and quantitative reoxidation of sulfide (i.e., cryptic sulfur cycling), (3) the initial oxygen isotope compositions of sulfate and water, and (4) the taxonomic structure of sulfur-metabolizing bacterial communities. To address these questions, this project studied four permanently stratified, anoxic and sulfidic (euxinic), lakes in southern British Columbia, Canada, and northern Washington, USA, that have a wide range of sulfate concentrations, from 0.15 – 120 mM. This project resulted in six key findings – (1) the measurement of large Δ34SSO4-H2S values at micromolar sulfate concentrations, (2) the consistent occurrence of δ18OSO4 minima at the chemocline that may be imparted during cryptic sulfur cycling, (3) that subsequent δ18OSO4 enrichments consistently preceded sulfide accumulation and δ34SSO4 enrichment in the suboxic zone of the water column, (4) that initial epilimnion Δ18OSO4-H2O values placed constraints on the maximum extent of δ18OSO4 evolution that occurred beneath the chemocline, (5) that observable changes in the metabolic composition of sulfur bacterial communities accompanied key inflections in the sulfur and oxygen isotope profiles of sulfate and sulfide within the water column, and (6) that, despite large overall differences in community structure, Δ34SSO4-H2S and Δ18OSO4-H2O values ultimately reached similar magnitudes in each lake.
A Glacier through a Grain of Sand: Sediment Micromorphology from a Land-Terminating Glacier in West Greenland
(2024-10) Woodie, Kayla Pearl; Licht, Kathy; Gilhooly, William P., III; Graly, Joseph
Isunnguata Sermia is a land terminating glacier in West Greenland with prominent upwellings of subglacial water in the outwash plain. Sediment that is suspended in the upwelling water is preserved in ice, creating a window into the subglacial environment. The presence of certain established microtextures, such as those caused by fluvial or high-stress processes, is indicative of a grain’s impact and transport history. Scanning electron microscopy (SEM) imaging of quartz sand grains is used to analyze this micromorphology. Across sand grains collected from different glacial depositional environments and the frozen subglacial water of Isunnguata Sermia, the microtexture distributions are extremely similar despite their different transport processes. While this may represent the limitations of microtexture analysis, it also suggests a high degree of sediment recycling in a basin that includes both the subglacial and the proglacial environment.
Abiotic processes are insufficient for fertile island development: A ten‐year artificial shrub experiment in a desert grassland
(Wiley, 2017) Li, Junran; Gilhooly, William P., III; Okin, Gregory S.; Blackwell, John; Department of Earth Sciences, School of Science
The relative importance of biotic and abiotic processes in the development of “fertile islands” in dryland systems has rarely been investigated. Here we approached this question by using artificial shrubs, which exclude plant litter production and soil nutrient uptake, but retain the functions of trapping windblown material, funneling of stemflow, and differential rain splash. We conducted a vegetation manipulation study more than a decade ago in the desert grassland of southern New Mexico and subsequently revisited the site in 2012 and 2015. The results show that no notable soil mounds were observed under the artificial shrubs; however, soil texture under the artificial shrubs has gradually changed to resemble the patterns of soil particle-size distribution under natural shrubs. Our results highlight that with the exclusion of direct biotic additions, soils captured by shrub canopies are not necessarily fertile and thus do not themselves contribute to the development of fertile islands.
Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep
(Wiley, 2015-11) Stevens, E. W. N.; Bailey, J. V.; Flood, B. E.; Jones, D. S.; Gilhooly, William P., III; Department of Earth Sciences, School of Science
Crusts and chimneys composed of authigenic barite are found at methane seeps and hydrothermal vents that expel fluids rich in barium. Microbial processes have not previously been associated with barite precipitation in marine cold seep settings. Here, we report on the precipitation of barite on filaments of sulfide-oxidizing bacteria at a brine seep in the Gulf of Mexico. Barite-mineralized bacterial filaments in the interiors of authigenic barite crusts resemble filamentous sulfide-oxidizing bacteria of the genus Beggiatoa. Clone library and iTag amplicon sequencing of the 16S rRNA gene show that the barite crusts that host these filaments also preserve DNA of Candidatus Maribeggiatoa, as well as sulfate-reducing bacteria. Isotopic analyses show that the sulfur and oxygen isotope compositions of barite have lower δ34S and δ18O values than many other marine barite crusts, which is consistent with barite precipitation in an environment in which sulfide oxidation was occurring. Laboratory experiments employing isolates of sulfide-oxidizing bacteria from Gulf of Mexico seep sediments showed that under low sulfate conditions, such as those encountered in brine fluids, sulfate generated by sulfide-oxidizing bacteria fosters rapid barite precipitation localized on cell biomass, leading to the encrustation of bacteria in a manner reminiscent of our observations of barite-mineralized Beggiatoa in the Gulf of Mexico. The precipitation of barite directly on filaments of sulfide-oxidizing bacteria, and not on other benthic substrates, suggests that sulfide oxidation plays a role in barite formation at certain marine brine seeps where sulfide is oxidized to sulfate in contact with barium-rich fluids, either prior to, or during, the mixing of those fluids with sulfate-containing seawater in the vicinity of the sediment/water interface. As with many other geochemical interfaces that foster mineral precipitation, both biological and abiological processes likely contribute to the precipitation of barite at marine brine seeps such as the one studied here.
Bioenergetic characterization of a shallow-sea hydrothermal vent system: Milos Island, Greece
(Public Library of Science, 2020-06-05) Lu, Guang-Sin; LaRowe, Douglas E.; Fike, David A.; Druschel, Gregory K.; Gilhooly, William P., III; Price, Roy E.; Amend, Jan P.; Earth and Environmental Sciences, School of Science
Shallow-sea hydrothermal systems, like their deep-sea and terrestrial counterparts, can serve as relatively accessible portals into the microbial ecology of subsurface environments. In this study, we determined the chemical composition of 47 sediment porewater samples along a transect from a diffuse shallow-sea hydrothermal vent to a non-thermal background area in Paleochori Bay, Milos Island, Greece. These geochemical data were combined with thermodynamic calculations to quantify potential sources of energy that may support in situ chemolithotrophy. The Gibbs energies (ΔGr) of 730 redox reactions involving 23 inorganic H-, O-, C-, N-, S-, Fe-, Mn-, and As-bearing compounds were calculated. Of these reactions, 379 were exergonic at one or more sampling locations. The greatest energy yields were from anaerobic CO oxidation with NO2- (-136 to -162 kJ/mol e-), followed by reactions in which the electron acceptor/donor pairs were O2/CO, NO3-/CO, and NO2-/H2S. When expressed as energy densities (where the concentration of the limiting reactant is taken into account), a different set of redox reactions are the most exergonic: in sediments affected by hydrothermal input, sulfide oxidation with a range of electron acceptors or nitrite reduction with different electron donors provide 85~245 J per kg of sediment, whereas in sediments less affected or unaffected by hydrothermal input, various S0 oxidation reactions and aerobic respiration reactions with several different electron donors are most energy-yielding (80~95 J per kg of sediment). A model that considers seawater mixing with hydrothermal fluids revealed that there is up to ~50 times more energy available for microorganisms that can use S0 or H2S as electron donors and NO2- or O2 as electron acceptors compared to other reactions. In addition to revealing likely metabolic pathways in the near-surface and subsurface mixing zones, thermodynamic calculations like these can help guide novel microbial cultivation efforts to isolate new species.
Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria
(Frontiers, 2016-04) Hamilton, Trinity L.; Bovee, Roderick J.; Sattin, Sarah R.; Mohr, Wiebke; Gilhooly, William P., III; Lyons, Timothy W.; Pearson, Ann; Macalady, Jennifer L.; Department of Earth Sciences, School of Science
Characterization of diverse bacteriohopanepolyols in a permanently stratified, hyper-euxinic lake
(Elsevier, 2022-06) O'Beirne, Molly D.; Sparkes, Robert; Hamilton, Trinity L.; van Dongen, Bart E.; Gilhooly, William P., III; Werne, Josef P.; Earth Science, School of Science
Bacteriohopanepolyols (BHPs) are a diverse class of bacterial lipids that hold promise as biomarkers of specific microbes, microbial processes, and environmental conditions. BHPs have been characterized in a variety of terrestrial and aquatic environments, but less is known about their distribution and abundance in extreme environmental systems. In the present study, samples taken from the water column and upper sediments of the hyper-euxinic, meromictic Mahoney Lake (Canada) were analyzed for BHPs. Analyses show distinct BHP distributions within the oxic mixolimnion, the chemocline, and the euxinic monimolimnion. Bacteriohopanetetrol (BHT) and unsaturated BHT are the dominant BHPs found in the oxic mixolimnion and at the chemocline, whereas a novel BHP (tentatively identified as diunsaturated aminotriol) dominates the euxinic monimolimnion. Along with the novel BHP structure, composite BHPs (i.e., BHT-cyclitol ether and BHT-glucosamine) were observed in the euxinic monimolimnion and sediments, indicating their production by anaerobic bacteria. Complementary metagenomic analysis of genes involved in BHP biosynthesis (i.e., shc, hpnH, hpnO, hpnP, and hpnR) further revealed that BHPs in Mahoney Lake are most likely produced by bacteria belonging to Deltaproteobacteria, Chloroflexi, Planctomycetia, and Verrucomicrobia. The combined observations of BHP distribution and metagenomic analyses additionally indicate that 2- and 3-methyl BHTs are produced within the euxinic sediments in response to low oxygen and high osmotic concentrations, as opposed to being diagnostic biomarkers of cyanobacteria and aerobic metabolisms.
A comprehensive sulfur and oxygen isotope study of sulfur cycling in a shallow, hyper-euxinic meromictic lake
(Elsevier, 2016-09) Gilhooly, William P., III; Reinhard, Christopher T.; Lyons, Timothy W.; Department of Earth Sciences, School of Science
Mahoney Lake is a permanently anoxic and sulfidic (euxinic) lake that has a dense plate of purple sulfur bacteria positioned at mid-water depth (∼7 m) where free sulfide intercepts the photic zone. We analyzed the isotopic composition of sulfate (δ34SSO4 and δ18OSO4), sulfide (δ34SH2S), and the water (δ18OH2O) to track the potentially coupled processes of dissimilatory sulfate reduction and phototrophic sulfide oxidation within an aquatic environment with extremely high sulfide concentrations (>30 mM). Large isotopic offsets observed between sulfate and sulfide within the monimolimnion (δ34SSO4-H2S = 51‰) and within pore waters along the oxic margin (δ34SSO4-H2S > 50‰) are consistent with sulfate reduction in both the sediments and the anoxic water column. Given the high sulfide concentrations of the lake, sulfur disproportionation is likely inoperable or limited to a very narrow zone in the chemocline, and therefore the large instantaneous fractionations are best explained by the microbial process of sulfate reduction. Pyrite extracted from the sediments reflects the isotopic composition of water column sulfide, suggesting that pyrite buried in the euxinic depocenter of the lake formed in the water column. The offset between sulfate and dissolved sulfide decreases at the chemocline (δ34SSO4-H2S = 37‰), a trend possibly explained by elevated sulfate reduction rates and inconsistent with appreciable disproportionation within this interval. Water column sulfate exhibits a linear response in δ18OSO4–δ34SSO4 and the slope of this relationship suggests relatively high sulfate reduction rates that appear to respond to seasonal changes in the productivity of purple sulfur bacteria. Although photosynthetic activity within the microbial plate influences the δ18OSO4–δ34SSO4 relationship, the biosignature for photosynthetic sulfur bacteria is restricted to the oxic/anoxic transition zone and is apparently minor relative to the more prevalent process of sulfate reduction operative throughout the light-deprived deeper anoxic water column and sediment pore waters.
Effect of Soil Type and Fertilizer Application Timing on Phosphorus Leaching From Gypsum-Treated Agricultural Soils
(2020-12) Cox, Kristiana; Jacinthe, Pierre-Andre; Wang, Lixin; Gilhooly, William P., III
Phosphorus is an essential plant nutrient and an important contributor to the eutrophication of aquatic ecosystems. Studies have shown that gypsum (CaSO4∙H2O) applications can potentially reduce phosphorus export from agricultural fields. Most studies have examined the effect of gypsum application rates on treatment effectiveness, but limited research has been conducted to determine how the timing of gypsum application can affect soil phosphorus mobility and phosphorus leaching. A greenhouse experiment was conducted to address this question and further our understanding of the effect of gypsum addition on soil phosphorus chemistry. For the experiment, two soil types with different background phosphorus levels (low P, high P), and three different time intervals between gypsum and phosphorus fertilizer application (2, 28 and 56 days) were applied. A total of 18 soil columns (L: 15 cm; diam: 10 cm) packed with sieved soil were treated with gypsum (3.9 g) and separated into three sets corresponding to each of the phosphorus application times. An equal number of columns not treated with gypsum were also included to serve as controls. Phosphorus fertilizer (0.34 mg P cm-1) was added as KH2PO4 solution. Rainwater (58 mL) was applied every 2-4 days to generate leachate that was collected and analyzed for ortho-P, total P, and SO4-2. At the end of each time series, the set of soil columns were sliced into 2-4 cm increments, and water extractable and bicarbonate extractable phosphorus (Olsen-P) was determined to examine downward phosphorus movement. Results of the study showed that Olsen-P levels were not affected by the gypsum treatment, indicating no interference of gypsum treatment with the P-supplying capacity of soils. The gypsum treatment reduced water-extractable P levels in the high-P soil, but treatment effect was not significant in the low-P soil. Likewise, in the high-P soil, gypsum treatment resulted in leachate ortho-P reduction during the second and third period of collection. For the low-P soil, there was no significant reduction in ortho-P. Overall, these results indicated that the beneficial effect of gypsum on phosphorus export from agricultural fields is dependent on soil-P status and time interval between gypsum amendment and P fertilizer application.
Effects of American Colonial Settlement and Deforestation on Lacustrine Redox Conditions: Longterm Insights from Martin Lake, Indiana
(2020-11) Henke, Alyssa Nicole; Gilhooly, William P., III; Bird, Broxton; Druschel, Gregory
Colonial settlement of Indiana changed the environment in significant ways; the aim of this study is to quantify the impacts of settlement through the use of geochemical proxies including: % lithics; the carbon (δ13C), nitrogen (δ15N), and sulfur (δ34S) isotope composition of organic matter; the elemental composition of carbon (TOC) and nitrogen (Ntot) in organic matter and their ratio (C/N); the δ34S of mineral sulfides (pyrite and acid volatile sulfides); and iron redox proxies. Lakes are a great recorder of aquatic-terrestrial linkages on both local and global scales. Martin lake’s watershed, in northeastern Indiana, was settled in 1840 by Euro-Americans, and since then clear shifts in lake chemistry are recorded in its sediments. A core spanning roughly the last 300 years taken from Martin Lake is the basis of this study. The impacts of settlement can be seen through the lenses of all the proxies that were used in this study. 1) Post-settlement deforestation increased erosion in Martin Lake’s watershed, increasing sedimentation rates and % lithics. 2) δ13C of organic matter reveals a pattern of deforestation and partial regrowth and agricultural use of land. 3) A pronounced increase in δ15N timed with the change in population at the time of settlement is consistent with the increased input of human or animal waste into Martin Lake. 4) TOC and C/N show an overall increase in the amount of organic matter within the lake caused by deforestation, and that the increased nutrient supply may have stimulated more in-lake productivity. 5) δ34S of mineral sulfides show that deforestation lead to an increase in the available sulfate pool of Martin Lake, which in combination with 6) an increase in FeHR created redox conditions in which pyrite formation was more favorable. These factors culminated in a transition in Martin Lake chemistry and redox cycling within the sediments.

Browsing by Author "Gilhooly, William P., III"

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