IU Indianapolis ScholarWorks :: Browsing by Author "Barnett, William H."

Browsing by Author "Barnett, William H."

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25th Annual Computational Neuroscience Meeting: CNS-2016
(BioMed Central, 2016-08-18) Sharpee, Tatyana O.; Destexhe, Alain; Kawato, Mitsuo; Sekulić, Vladisla; Skinner, Frances K.; Wójcik, Daniel K.; Chintaluri, Chaitanya; Cserpán, Dorottya; Somogyvári, Zoltán; Kim, Jae Kyoung; Kilpatrick, Zachary P.; Bennett, Matthew R.; Josić, Kresimir; Elices, Irene; Arroyo, David; Levi, Rafael; Rodriguez, Francisco B.; Varona, Pablo; Hwang, Eunjin; Kim, Bowon; Han, Hio-Been; Kim, Tae; McKenna, James T.; Brown, Ritchie E.; McCarley, Robert W.; Choi, Jee Hyun; Rankin, James; Popp, Pamela Osborn; Rinzel, John; Tabas, Alejandro; Rupp, André; Balaguer‑Ballester, Emili; Maturana, Matias I.; Grayden, David B.; Cloherty, Shaun L.; Kameneva, Tatiana; Ibbotson, Michael R.; Meffin, Hamish; Koren, Veronika; Lochmann, Timm; Dragoi, Valentin; Obermayer, Klaus; Psarrou, Maria; Schilstra, Maria; Davey, Neil; Ju, Huiwen; Hines, Michael L.; Chen, Liang; Kim, Jimin; Leahy, Will; Shlizerman, Eli; Birgolias, Justas; Gerkin, Richard C.; Crook, Sharon M.; Viriyopase, Atthaphon; Memmeshei, Raol-Martin; Dabaghian, Yuri; DeVuti, Justin; Perotti, Luca; Kim, Ammo J.; Fenk, Lisa M.; Lyu, Cheng; Malmon, Gabby; Zhao, Chang; Widmer, Yves; Sprecher, Simon; Halnes, Geir; Tuomo, Maki-Martun; Keller, Daniel; Petterson, Klas H.; Andreassen, Ole A.; Elnevoll, Gaute T.; Yamada, Yasnori; Steyn-Ross, Moira L.; Steyn-Ross, D. Alistair; Meijas, Jorge F.; Murray, John D.; Kennedy, Henry; Kruscha, Alexandra; Grewe, Jan; Lidner, Benjamin; Badel, Laurent; Kasumi, Ohta; Tsuchimoto, Yoshiko; Kazama, Hokto; Kahng, B.; Tam, Nicoladie D.; Pollonini, Luca; Zouridakis, George; Soh, Jaehyun; Kim, DaeEun; Yoo, Minsu; Palmer, S.E.; Culmone, Viviana; Bojak, Ingo; Ferrario, Andrea; Merriosn-Hort, Robert; Borisyuk, Roman; Kim, Chang Sub; Tezuka, Taro; Joo, Pangyu; Young-Ah, Rho; Burton, Shawn D.; Bard, G.; Marsalek, Petr; Kim, Hoon-Hee; Moon, Seok-hun; Lee, Do-won; Molkov, Yaroslav I.; Hamade, Khaldoun; Teka, Wondimu; Barnett, William H.; Kim, Taegyo; Markin, Sergey; Rybak, Ilya A.; Forrow, Csaba; Demutz, Harald; Demkó, László; Vörös, János; Dabaghian, Yuri; Babichev, Andrey; Huang, Haiping; Metzner, Christoph; Schwikard, Achim; Zurowski, Bartosz; Roach, James P.; Sander, Leonard M.; Zochowski, Michal R.; Skilling, Quinton M.; Ognjanovski, Nicolette; Aton, Sara J.; Zochowski, Michal; Wang, Sheng-Ju; Ouyang, Guang; Zhang, Mingsha; Wong, Michael; Zhou, Changsong; Robinson, Peter A.; Sanz-Leon, Paula; Drysdale, Peter M.; Fung, Felix; Abeysuriya, Romesh G.; Rennle, Chris J.; Zhao, Xuelong; Choe, Yoonsuck; Yang, Huei-Fang; Mi, Yuanyuan; Lin, Xiahoan; Wu, Si; Liedtke, Joscha; Schottdorf, Manual; Wolf, Fred; Yamamura, Yorkio; Wickens, Jeffery R.; Rumbell, Timothy; Ramsey, Julia; Reyes, Amy; Draguljić, Daniel; Hof, Patrick R.; Luebke, Jennifer; Weaver, Christina M.; He, Hu; Yang, Xu; Ma, Hailin; Xu, Zhiheng; Wang, Yuzhe; Baek, Kwangyeol; Morris, Laurel S.; Kundu, Prantik; Voon, Valerie; Agnes, Everton J.; Vogels, Tim P.; Giese, Martin; Kuravi, Pradeep; Vogels, Rufin; Seeholzer, Alexander; Podlaski, William; Ranjan, Rajnish; Vogels, Tim; Torres, Joaquin J.; Baroni, Fabiano; Latorre, Roberto; Varona, Pablo; Gips, Bart; Lowet, Eric; Roberts, Mark J.; de Weerd, Peter; Jensen, Ole; van der Eerden, Jan; Goodarzinic, Abdorreza; Niry, Mohammad; Valizadeh, Alireza; Pariz, Aref; Parsi, Shervin S.; Valizadeh, Alireza; Warburton, Julia M.; Marucci, Lucia; Tamagnini, Francesco; Brown, John; Tsaneva‑Atanasova, Krasimira; Kleberg, Florence I.; Triesch, Jochen; Moezzi, Bahar; Iannella, Nicolangelo; Schaworonkow, Natalie; Plogmacher, Lukas; Goldsworthy, Mitchell R.; Hordacre, Brenton; McDonnell, Mark D.; Ridding, Michael C.; Trisch, Jochen; Zaptocky, Martin; Smit, Daniel; Fouquet, Coralie; Trembleau, Alain; Dasgupta, Sakyasingha; Nishikawa, Isao; Aihara, Kazuyuki; Toyoizumi, Taro; Robb, Daniel T.; Mellen, Nick; Toporikova, Natalia; Tang, Rongxiang; Tang, Yi-Yuan; Kiser, Seth A.; Howard Jr., James H.; Tang, Yi-Yuan; Goncharenko, Julia; Davey, Neil; Schilstra, Marla; Steuber, Volker; Voronenko, Sergej O.; Linder, Benjamin; Ahamed, Tosif; Stephens, Greg; Yger, Pierre; Lefebvre, Baptiste; Spampinato, Giulia Lia Beatrice; Esposito, Elric; Stimberg, Marcel; Marre, Olivier; Choi, Hansol; Song, Min-Ho; Chung, SueYeon; Lee, Dan D.; Sompolinsky, Haim; Phillips, Ryan S.; Smith, Jeffrey; Chatzikalymniou, Alexandra Pierri; Ferguson, Katie; Skinner, Frances K.; Gajic, N. Alex Cayco; Clopath, Claudia; Silver, R. Angus; Gleeson, Padraig; Marin, Boris; Sadeh, Sadra; Quintana, Adrian; Cantarelli, Matteo; Dura‑Bernal, Salvador; Lytton, William W.; Davison, Andrew; Silver, Angus; Li, Luozheng; Zhang, Wenhao; Mi, Yuanyuan; Wang, Dahui; Wu, Sl; Song, Youngjo; Park, Sol; Choi, Ilhwan; Jeong, Jaeseung; Shin, Hee‑sup; Choi, Hannah; Pasupathy, Anitha; Shea-Brown, Eric; Huh, Dongsung; Sejnowski, Terrence J.; Vogt, Simon M.; Kumar, Arvind; Schmidt, Robert; Werdt, Stephen Van; Schiff, Steven J.; Veale, Richard; Scheutz, Matthias; Lee, Sang Wan; Gallinaro, Júlia; Rotter, Stefan; Sanz‑Leon, Paula; Robinson, Peter A.; Rubchinsky, Leonid L.; Cheung, Chung Ching; Ratnadurai‑Giridharan, Shivakeshavan; Shomali, Safura Rashid; Ahmadabadi, Majid Nili; Shimazaki, Hideaki; Rasuli, Nader; Zhao, Xiaochen; Rasch, Malte J.; Witting, Jens; Priesemann, Viola; Levina, Anna; Priesemann, Viola; Lizler, Joseph T.; Spinney, Richard E.; Rubinov, Mikail; Wibral, Michael; Bak, Ji Hyun; Pillow, Jonathan; Zaho, Yuan; Park, Memming; Kang, Jiyoung; Park, Hae‑Jeong; Jang, Jaeson; Paik, Se-Bum; Choi, Woochul; Lee, Changju; Jang, Jaeson; Paik, Se‑Bum; Song, Min; Lee, Hyeonsu; Yilmaz, Ergin; Baysal, Velt; Ozer, Mahmut; Koren, Veronika; Obermayer, Klaus; Saska, Daniel; Nowotny, Thomas; Chan, Ho Ka; Diamond, Alan; Hermann, Christoph S.; Murray, Micha M.; Ionta, Silvlo; Hutt, Axel; Lefebvre, Jérémie; Weidel, Philipp; Duarte, Renato; Morrison, Abigail; Iyer, Ramakrishnan; Mihalas, Stefan; Petrovici, Mihai A.; Leng, Luziwei; Breitwieser, Oliver; Stöckel, David; Bytschok, Ilja; Martel, Roman; Bill, Johannes; Schemmel, Johannes; Meier, Karlheinz; Esler, Timothy B.; Burkitt, Anthony N.; Grayden, David B.; Kerr, Robert R.; Tahayori, Bahman; Meffin, Hamish; Moezzi, Bahar; Iannella, Nicolangelo; McDonnell, Mark D.; Nolte, Max; Reimann, Michael W.; Muler, Eilif; Markram, Henry; Parziale, Antonio; Senatore, Rosa; Marcelli, Angelo; Maouene, M.; Skiker, K.; Neymotin, Samuel A.; Dura‑Bernal, Salvador; Seidenstein, Alexandra; Lakatos, Peter; Sanger, Terence D.; Lytton, William W.; Dura‑Bernal, Salvador; Menzies, Rosemary J.; McLauchlan, Campbell; van Albada, Sacha J.; Kedziora, David J.; Neymotin, Samuel; Kerr, Cliff C.; Ryu, Juhyoung; Lee, Sang-Hun; Lee, Joonwon; Lee, Hyang Jung; Lim, Daeseob; Lee, Jung H.; Wang, Jisung; Lee, Heonsoo; Jung, Nam; Quang, Le Anh; Maeng, Seung Eu; Lee, Tae Ho; Lee, Jae Woo; Park, Chang-hyun; Ahn, Sora; Moon, Jangsup; Choi, Yun Seo; Kim, Juhee; Jun, Sang Beom; Lee, Seungjun; Lee, Hyang Woon; Jo, Sumin; Jun, Eunji; Yu, Suin; Goetze, Felix; Lai, Pik‑Yin; Kwag, Jeehyun; Liang, Guangsheng; Jang, Hyun Jae; Filipovi, Marko; Reig, Ramon; Aertsen, Ad; Silberberg, Gilad; Kumar, Arvind; Bachmann, Claudia; Buttler, Simone; Jacobs, Heidi; Dillen, Kim; Fink, Gereon R.; Kukolja, Juraj; Kepple, Daniel; Giaffar, Hamza; Rinberg, Dima; Shea, Steven; Koulakov, Alex; Bahuguna, Jyotika; Tetzlaff, Tom; Kotaleski, Jeanette Hellgren; Kunze, Tim; Peterson, Andre; Knösche, Thomas; Kim, Minjung; Kim, Hojeong; Park, Ji Sung; Yeon, Ji Won; Kim, Sung-Phil; Lee, Chungho; Kim, Sung-Phil; Spiegler, Andreas; Petkoski, Spase; Palva, Matias J.; Jirsa, Viktor K.; Saggio, Maria L.; Siep, Silvan F.; Stacey, William C.; Bernard, Christophe; Choung, Oh‑hyeon; Jeong, Yong; Lee, Yong‑il; Jeong, Jaesung; Kim, Su Hyun; Lee, Jeungmin; Kwon, Jaehyung; Kralik, Jerald D.; Hwang, Dong‑Uk; Park, Sang-Min; Kim, Seongkyun; Kim, Hyoungkyu; Lim, Sewoong; Yoon, Sangsup; Park, Choongseok; Miller, Thomas; Clements, Katie; Hye Jr., Eoon; Issa, Fadi A.; Baek, JeongHun; Oba, Shigeyuki; Yoshimoto, Junichiro; Doya, Kenji; Ishii, Shin; Mosqueiro, Thiago S; Strube‑Bloss, Martin F.; Smith, Brian; Huerta, Ramon; Hadrava, Michal; Hlinka, Jaroslav; Bos, Hannah; Helias, Moritz; Welzig, Charles M.; Harper, Zachary J.; Kim, Won Sup; Shin, In-Seob; Baek, Hyeon-Man; Han, Seung Kee; Richter, René; Vitay, Julien; Beuth, Frederick; Hamker, Fred H.; Kameneva, Tatiana; Graham, Bruce P.; Kale, Penelope J.; Gollo, Leonardo L.; Stern, Merav; Abbott, L.F.; Fedorov, Leonid A.; Giese, Martin A.; Ardestani, Mohammad Hovaidi; Giese, Martin; Chakravarthy, V.Srinivasa; Chhabria, Karishma; Philips, Ryan T.; Ardestani, Mohammad Hovaidi; Faraji, Mohammad Java; Preuschoff, Kerstin; Gerstner, Wulfram; Briaire`, Jeroen J.; Kalkman, Randy K.; Frijns, Johan H. M.; Lee, Won Hee; Frangou, Sophia; Fulcher, Ben D.; Tran, Patricia H. P.; Fornito, Alex; Gliske, Stephen V.; Stacey, William C.; Holman, Katherine A.; Fink, Christian G.; Kim, Jinseop; Mu, Shang; Briggman, Kevin L; Seung, H. Sebastian; Wegener, Detlef; Bohnenkamp, Lisa; Ernst, Udo A.; Mäki‑Marttunen, Tuomo; Halnes, Geir; Devor, Anna; Dale, Anders M.; Andreassen, Ole A.; Einevoll, Gaute T.; Hagen, Espen; Lines, Glenn T.; Edwards, Andy; Tveito, Aslak; Senk, Johanna; van Albada, Sacha J; Diesmann, Markus; Schmidt, Maximilian; Bakker, Rembrandt; Shen, Kelly; Bezgin`, Gleb; Hilgetag`, Claus‑Christian; Sun, Haoqi; Sourina, Olga; Huang, Guang-Bin; Klanner, Felix; Denk, Cornelia; Glomb, Katharina; Ponce‑Alvarez, Adrián; Gilson, Matthieu; Ritter, Petra; Deco, Gustavo; Witek, Maria A. G.; Clarke, Eric F.; Hansen, Mads; Wallentin, Mikkel; Kringelbach, Morten L.; Vuust, Peter; Klingbeil, Guido; Schutter, Erik De; Chen, Weiliang; Hong, Sungho; Takashima, Akira; Zamora, Criseida; Gallimore, Andrew R.; Karoly, Philippa J.; Freestone, Dean R.; Soundry, Daniel; Kuhlmann, Levin; Paninski, Liam; Cook, Mark; Lee, Jaejin; Fishman, Yonatan I.; Cohen, Yale E.; Cocchi, Luca; Sweeney, Yann; Lee, Soohyun; Jung, Woo-Sung; Kim, Bowon; Kim, Youngsoo; Jung, Younginha; Rankin, James; Chavane, Frédéric; Soman, Karthik; Muralidharan, Vignesh; Shivkumar, Sabyasach; Mandall, Alekhya; Priyadharsini, B. Praga; Mehta, Hima; Brinkman, Braden A.; Kekona, Tyler; Rieke, Fred; Shea‑Brown, Eric; Buice, Michael; Pittà, Maurizio De; Berry, Hugues; Brunel, Nicolas; Breakspear, Michael; Marsat, Gary; Drew, Jordan; Chapman, Phillip D.; Daly, Kevin C.; Bradley, Samual P.; Seo, Sat Byul; Su, Jianzhong; Kavalali, Enge T.; Blackwell, Justin; Shiau, LieJune; Buhry, Laure; Basnayake, Kanishka; Lee, Sue-Hyun; Levy, Brandon A.; Baker, Chris I.; Leleu, Timothée; Aihara, Kazuyuki; Department of Mathematical Sciences, School of Science
Chemoreception and neuroplasticity in respiratory circuits
(Elsevier, 2017-01) Barnett, William H.; Abdala, Ana P.; Paton, Julian F. R.; Rybak, Ilya A.; Zoccal, Daniel B.; Molkov, Yaroslav I.; Mathematical Sciences, School of Science
The respiratory central pattern generator must respond to chemosensory cues to maintain oxygen (O2) and carbon dioxide (CO2) homeostasis in the blood and tissues. To do this, sensorial cells located in the periphery and central nervous system monitor the arterial partial pressure of O2 and CO2 and initiate respiratory and autonomic reflex adjustments in conditions of hypoxia and hypercapnia. In conditions of chronic intermittent hypoxia (CIH), repeated peripheral chemoreceptor input mediated by the nucleus of the solitary tract induces plastic changes in respiratory circuits that alter baseline respiratory and sympathetic motor outputs and result in chemoreflex sensitization, active expiration, and arterial hypertension. Herein, we explored the hypothesis that the CIH-induced neuroplasticity primarily consists of increased excitability of pre-inspiratory/inspiratory neurons in the pre-Bötzinger complex. To evaluate this hypothesis and elucidate neural mechanisms for the emergence of active expiration and sympathetic overactivity in CIH-treated animals, we extended a previously developed computational model of the brainstem respiratory-sympathetic network to reproduce experimental data on peripheral and central chemoreflexes post-CIH. The model incorporated neuronal connections between the 2nd-order NTS neurons and peripheral chemoreceptors afferents, the respiratory pattern generator, and sympathetic neurons in the rostral ventrolateral medulla in order to capture key features of sympathetic and respiratory responses to peripheral chemoreflex stimulation. Our model identifies the potential neuronal groups recruited during peripheral chemoreflex stimulation that may be required for the development of inspiratory, expiratory and sympathetic reflex responses. Moreover, our model predicts that pre-inspiratory neurons in the pre-Bötzinger complex experience plasticity of channel expression due to excessive excitation during peripheral chemoreflex. Simulations also show that, due to positive interactions between pre-inspiratory neurons in the pre-Bötzinger complex and expiratory neurons in the retrotrapezoid nucleus, increased excitability of the former may lead to the emergence of the active expiratory pattern at normal CO2 levels found after CIH exposure. We conclude that neuronal type specific neuroplasticity in the pre-Bötzinger complex induced by repetitive episodes of peripheral chemoreceptor activation by hypoxia may contribute to the development of sympathetic over-activity and hypertension.
Distinct cortico-striatal compartments drive competition between adaptive and automatized behavior
(Public Library of Science, 2023-03-21) Barnett, William H.; Kuznetsov, Alexey; Lapish, Christopher C.; Psychology, School of Science
Cortical and basal ganglia circuits play a crucial role in the formation of goal-directed and habitual behaviors. In this study, we investigate the cortico-striatal circuitry involved in learning and the role of this circuitry in the emergence of inflexible behaviors such as those observed in addiction. Specifically, we develop a computational model of cortico-striatal interactions that performs concurrent goal-directed and habit learning. The model accomplishes this by distinguishing learning processes in the dorsomedial striatum (DMS) that rely on reward prediction error signals as distinct from the dorsolateral striatum (DLS) where learning is supported by salience signals. These striatal subregions each operate on unique cortical input: the DMS receives input from the prefrontal cortex (PFC) which represents outcomes, and the DLS receives input from the premotor cortex which determines action selection. Following an initial learning of a two-alternative forced choice task, we subjected the model to reversal learning, reward devaluation, and learning a punished outcome. Behavior driven by stimulus-response associations in the DLS resisted goal-directed learning of new reward feedback rules despite devaluation or punishment, indicating the expression of habit. We repeated these simulations after the impairment of executive control, which was implemented as poor outcome representation in the PFC. The degraded executive control reduced the efficacy of goal-directed learning, and stimulus-response associations in the DLS were even more resistant to the learning of new reward feedback rules. In summary, this model describes how circuits of the dorsal striatum are dynamically engaged to control behavior and how the impairment of executive control by the PFC enhances inflexible behavior.
Understanding ethanol's acute effects on medial prefrontal cortex neural activity using state-space approaches
(Elsevier, 2021) Morningstar, Mitchell D.; Barnett, William H.; Goodlett, Charles R.; Kuznetsov, Alexey; Lapish, Christopher C.; Psychology, School of Science
Acute ethanol (EtOH) intoxication results in several maladaptive behaviors that may be attributable, in part, to the effects of EtOH on neural activity in medial prefrontal cortex (mPFC). The acute effects of EtOH on mPFC function have been largely described as inhibitory. However, translating these observations on function into a mechanism capable of delineating acute EtOH's effects on behavior has proven difficult. This review highlights the role of acute EtOH on electrophysiological measurements of mPFC function and proposes that interpreting these changes through the lens of dynamical systems theory is critical to understand the mechanisms that mediate the effects of EtOH intoxication on behavior. Specifically, the present review posits that the effects of EtOH on mPFC N-methyl-d-aspartate (NMDA) receptors are critical for the expression of impaired behavior following EtOH consumption. This hypothesis is based on the observation that recurrent activity in cortical networks is supported by NMDA receptors, and, when disrupted, may lead to impairments in cognitive function. To evaluate this hypothesis, we discuss the representation of mPFC neural activity in low-dimensional, dynamic state spaces. This approach has proven useful for identifying the underlying computations necessary for the production of behavior. Ultimately, we hypothesize that EtOH-related alterations to NMDA receptor function produces alterations that can be effectively conceptualized as impairments in attractor dynamics and provides insight into how acute EtOH disrupts forms of cognition that rely on mPFC function. This article is part of the special Issue on 'Neurocircuitry Modulating Drug and Alcohol Abuse'.

Browsing by Author "Barnett, William H."

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